1. Inparanoid:
Database of pairwise orthologs.
We got the sequences and ortholog information of human
and mouse here, as our starting point.
2. BLAST:
We used Standard BLASTP for sequence alignment, with
blastall.exe of BLAST package for windows version.
3. PSORT
II: We got a commend-line version
of PSORT II from the authors, for proteins sublocalization
prediction.
4. CLUSTALW/X:
We download the commend-line of CLUSTALW for global
sequence alignment of pairwise orthologs.
5. SUMOplot:
Pattern recognition only approach to predict potential
SUMOylation sites.
6. ELM:
functional sites in eukaryotic proteins.
7. PROSITE:
a database of protein families and domains.
8. Protein
Sequence Logos using Relative Entropy
